pyphylogenomics
  • PyPhyloGenomics A package to work on Phylogenomics
    • Developers
    • Installing PyPhyloGenomics
    • Install dependencies
    • Reading PyPhyloGenomics’ documentation:
    • Reproduce our analysis:
  • Installation
  • Usage
    • Finding candidate genes from Bombyx mori
    • Validation of exon structure
    • Small break
    • Exon Alignment
    • Primer design
    • Analysis of raw data output from IonTorrent
    • Prepare raw NGS data
    • Find reads matching target genes
    • Separate gene bins according to indexes (or barcodes)
    • Assembly of reads into consensus sequences
  • History
    • 0.4.x (201x-xx-xx)
    • 0.3.13 (2014-12-23)
    • 0.3.12 (2013-11-14)
  • pyphylogenomics Package
    • pyphylogenomics Package
    • BLAST Module
    • MUSCLE Module
    • NGS Module
    • _orthodb Module
 
pyphylogenomics
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© Copyright 2014, Carlos Pena.

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