pyphylogenomics
PyPhyloGenomics A package to work on Phylogenomics
Developers
Installing PyPhyloGenomics
Install dependencies
Reading PyPhyloGenomics’ documentation:
Reproduce our analysis:
Installation
Usage
Finding candidate genes from
Bombyx mori
Validation of exon structure
Small break
Exon Alignment
Primer design
Analysis of raw data output from IonTorrent
Prepare raw NGS data
Find reads matching target genes
Separate gene bins according to indexes (or barcodes)
Assembly of reads into consensus sequences
History
0.4.x (201x-xx-xx)
0.3.13 (2014-12-23)
0.3.12 (2013-11-14)
pyphylogenomics Package
pyphylogenomics
Package
BLAST
Module
MUSCLE
Module
NGS
Module
_orthodb
Module
pyphylogenomics
Docs
»
<no title>
Edit on GitHub
Carlos Peña
Victor Solis
Pavel Matos
Chris Wheat